患者血清microRNA表达谱及相关生物信息学分析
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国家自然科学基金(31871157,82170046);四川省重点研发计划(2020YFS0147)


Serum microRNA expression profiles and bioinformatics analysis in patients with chronic obstructive pulmonary disease
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    摘要:

    探讨慢性阻塞性肺疾病(COPD)患者血清中microRNA(miRNA)的差异性表达谱,并通过生物信息学探索其意义。方法 下载GEO数据库开源数据集(GSE70080),分析慢阻肺患者与正常人血清的miRNA差异性表达谱,分析其对慢阻肺的诊断价值,运用miRTarbase、Target Scan、PicTar 、miRDB等软件预测和筛选miRNAs的靶基因,并将得出的上述靶基因功能富集、信号通路及蛋白质互作网络分析。 结果 该数据集中慢阻肺与健康对照组血清差异表达的miRNA共62个(P<0.05) ,其中较对照组上调8个,下调54个,上调miRNA和下调miRNA诊断慢阻肺的受试者曲线下面积分别为0.938和0.969。靶基因预测显示差异性表达miRNA共有15099个靶基因,GO功能分析显示上述靶基因主要涉及Wnt、MAPK、NF-κB等重要生物学过程,KEGG分析主要富集于Wnt、NFκB、MAPK等信号通路。miRNA和mRNA的网络图显示SLC4A8与多个miRNA相关。蛋白质互作网络显示靶基因编码蛋白质间存在复杂的相互作用,ACVR1B、ACVRL1、KRT2、KRT74、KRT82在互作网络中具有核心地位。结论 慢阻肺患者的血清miRNA存在差异性表达,miRNA可能通过调控靶基因参与调控相关的生物功能和通路参与慢阻肺发病机制调控

    Abstract:

    To investigate the clinical significance of microRNAs (miRNAs) in peripheral blood of patients with chronic obstructive pulmonary disease (COPD). Methods Serum miRNA dataset (GSE70080) was downloaded from GEO and differentially expressed miRNAs were identified between COPD and controls. The receiver operating characteristic curve for the miRNA diagnosis performance in COPD were performed. The final target genes were predicted and validated by miRTarbase, Targetscan, PicTar, miRDB. Bioinformatics function analysis was constructed including Gene Ontology analysis, signal pathway analysis, miRNAs-target gene network and the protein=protein interaction (PPI). Results Sixty-two (eight upregulated and fifty-four downregulated) miRNAs were screened out. The area under the receiver operating characteristic curve of up and down regulated miRNAs for the diagnosis of COPD were 0.938 and 0.969, respectively. The target genes of miRNA were mainly enriched in WNT, MAPK, NF-κB signaling pathway. Through the miRNAs-target gene network construction, the hub genes were SLC4A8, found to be potentially modulated by seven miRNAs. ACVR1B, ACVRL1, KRT2, KRT74 and KRT82 maybe play a core role in PPI network. Conclusion Significant differential expressed miRNAs exist in the serum of patients with COPD, and they may be involved in the pathogenesis of COPD through a serial of mechanisms.

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  • 在线发布日期: 2023-01-17
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